Metagenomes used in the analysis by Dinsdale, et al. PLoS One, 2008

This table shows the metadata and links to sources of the data and citations associated with the publicly available metagenome sequences used in the Dinsdale,et al., analysis of eight different metagenomes collected across the northern Line Island. The links will take you to the annotated sequences in the metagenomics SEED, CAMERA, and the NCBI Short Read Archve. Please note that all metagenomes are currently available to download via the ftp links, some are available in the meta-RAST, and other links will be added as soon as they become available. Citations for individual metagenomes will also be added as and when they become available.

DNA sequences for all metagenomes are avaialble via anonymous FTP. You may browse the list at ftp.theseed.org or select an individual genome from the list below.

Citation:

For those metagenomes whose annotations are publicly available in the meta-RAST, the link will take you to the new version of the RAST web pages.

We have had extensive press coverage about this work. Here are a selection of press releases:

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Number in Manuscript 
Name 
Description 
Citation 
Download via FTP 
metaRAST 
NCBI Genome Project 
CAMERA 
Sequence manipulation 
Library Type 
Project 
Contact 
Other Key Words 
Coordinates 
Collection date 
24Line Islands Kingman Reef B2 bacteriaMicrobial fraction (100-0.45 micron) from water below the boundary layer (e.g., crevices and benthic surfaces) of Kingman Atoll (Northern Line Islands). Sequenced at 454 Life Sciences.Dinsdale et al, PLoS One, 3:e15844440037.3.fa.gz4440037.328343KingLIMic082105NoneMicrobialMarineLiz DinsdaleCoral; Seawater6.38566667, -162.334783308/21/2005
25Line Islands Christmas Reef B3 bacteriaMicrobial fraction (100-0.45 micron) from water below the boundary layer (e.g., crevices and benthic surfaces) of Christmas Atoll (a.k.a., Kirtimati; Northern Line Islands). Sequenced at 454 Life Sciences.Dinsdale et al, PLoS One, 3:e15844440041.3.fa.gz4440041.328347XmasLIMic080505NoneMicrobialMarineLiz DinsdaleCoral; Seawater1.99231667, -157.484066708/05/2005
26Line Islands Palmyra F8 BacteriaMicrobial fraction (100-0.45 micron) from water below the boundary layer (e.g., crevices and benthic surfaces) of Palmyra (Northern Line Islands). Sequenced at 454 Life Sciences.Dinsdale et al., PLoS One, 3:e15844440039.3.fa.gz4440039.328363PalmLIMic081805NoneMicrobialMarineLiz DinsdaleCoral; Seawater5.86683333,-162.1279666708/18/2005
27Line Islands Tabuaeran B1 BacteriaMicrobial fraction (100-0.45 micron) from water below the boundary layer (e.g., crevices and benthic surfaces) of Fanning (a.k.a., Tabuaeran; Northern Line Islands). Sequenced at 454 Life Sciences.Dinsdale et al., PLoS One, 3:e15844440279.3.fa.gz4440279.328367FannLIMic081105Sequences similar to dinoflagellates removedMicrobialMarineLiz DinsdaleCoral; Seawater3.82595000,-159.3495666708/11/2005
36Line Islands Kingman Reef B2 phageViral fraction from water below the boundary layer (e.g., crevices and benthic surfaces) of Kingman Atoll (Northern Line Islands). Sequenced at 454 Life Sciences.Dinsdale et al, PLoS One, 3:e15844440036.3.fa.gz4440036.328345KingLIVir082105NoneViralMarineLiz DinsdaleCoral; Seawater6.38566667, -162.334783308/21/2005
37Line Islands Christmas Reef B3 phageViral fraction from water below the boundary layer (e.g., crevices and benthic surfaces) of Christmas Atoll (a.k.a., Kirtimati; Northern Line Islands). Sequenced at 454 Life Sciences.Dinsdale et al, PLoS One, 3:e15844440038.3.fa.gz4440038.328349XmasLIVir080505NoneViralMarineLiz DinsdaleCoral; Seawater1.99231667, -157.484066708/05/2005
38Line Islands Palmyra F8 PhageViral fraction from water below the boundary layer (e.g., crevices and benthic surfaces) of Palmyra (Northern Line Islands). Sequenced at 454 Life Sciences.Dinsdale et al., PLoS One, 3:e15844440040.3.fa.gz4440040.328365PalmLIVir081805NoneViralMarineLiz DinsdaleCoral; Seawater5.86683333,-162.1279666708/18/2005
39Line Islands Tabuaeran B1 PhageViral fraction from water below the boundary layer (e.g., crevices and benthic surfaces) of Fanning (a.k.a., Tabuaeran; Northern Line Islands). Sequenced at 454 Life Sciences.Dinsdale et al., PLoS One, 3:e15844440280.3.fa.gz4440280.328369FannLIVir081105NoneViralMarineLiz DinsdaleCoral; Seawater3.82595000,-159.3495666708/11/2005
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