Difference between revisions of "Home of the SEED"
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* We provide a list [[Glossary]] of terms used. | * We provide a list [[Glossary]] of terms used. | ||
* When using the SEED, please cite: Overbeek et al., [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16214803&query_hl=2&itool=pubmed_docsum|Nucleic Acids Res 33(17)], 2005 | * When using the SEED, please cite: Overbeek et al., [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16214803&query_hl=2&itool=pubmed_docsum|Nucleic Acids Res 33(17)], 2005 | ||
| − | * Ross Overbeek laid out the strategy for the annotation of the first 1000 genomes in [[ | + | * Ross Overbeek laid out the [[Annotating_1000_genomes|strategy]] for the annotation of the first 1000 genomes. |
| + | * Our approaches to annotation, gene calling etc are outlined in a series of [[SOPs|Standard Operating Procedures]]. | ||
Revision as of 15:25, 1 August 2006
Home of the SEED
With the growing number of genomes becoming available, a software environment is needed to produce accurate and consistent annotations.
The SEED is that environment, we provide a read-only copy of the SEED environment with the latest data and annotations. For users interested in editing and learning how to use the system, we also provide a public SEED.
The annoation is performed not on a gene by gene basis per genome, but rather by subsystem by an expert curator across many genomes at a time.
- You can download software and data from our Download page.
- We provide a list Glossary of terms used.
- When using the SEED, please cite: Overbeek et al., Acids Res 33(17), 2005
- Ross Overbeek laid out the strategy for the annotation of the first 1000 genomes.
- Our approaches to annotation, gene calling etc are outlined in a series of Standard Operating Procedures.