Difference between revisions of "Home of the SEED"

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For users interested in editing and learning how to use the system, we also provide a [http://theseed.uchicago.edu/FIG/index.cgi public SEED].
 
For users interested in editing and learning how to use the system, we also provide a [http://theseed.uchicago.edu/FIG/index.cgi public SEED].
  
The annotation is performed not on a gene by gene basis per genome, but rather by subsystem by an expert curator across many genomes at a time.  
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The [[Glossary#annotation|annoation]] is performed not on a gene by gene basis per genome, but rather by [[Glossary#subsystem|subsystem]] by an expert curator across many genomes at a time.  
  
  
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* You can download software and data from our [[Download]] page.
 
* You can download software and data from our [[Download]] page.
 
* We provide a list [[Glossary]] of terms used.
 
* We provide a list [[Glossary]] of terms used.
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* When using the SEED, please cite: Overbeek et al., The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes
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Nucleic Acids Res 33(17), 2005

Revision as of 10:27, 1 August 2006

Home of the SEED

With the growing number of genomes becoming available, a software environment is needed to produce accurate and consistent annotations.

The SEED is that environment, we provide a read-only copy of the SEED environment with the latest data and annotations. For users interested in editing and learning how to use the system, we also provide a public SEED.

The annoation is performed not on a gene by gene basis per genome, but rather by subsystem by an expert curator across many genomes at a time.



  • You can download software and data from our Download page.
  • We provide a list Glossary of terms used.
  • When using the SEED, please cite: Overbeek et al., The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes

Nucleic Acids Res 33(17), 2005