The Daily SEED


PUBSEED ANNOTATIONS

In 1 genome
OLD: ATP-binding protein
NEW: ATP-binding protein SCO5169

In 7 genomes
OLD: ATP-binding protein based on unreliable automated assignments
NEW: ATP-binding protein SCO5169

In 3 genomes
OLD: Activator of ProP osmoprotectant transporter
NEW: RNA chaperone ProQ

In 3 genomes
OLD: Activator of ProP osmoprotectant transporter based on FIGfams
NEW: RNA chaperone ProQ

In 1 genome
OLD: Activator of osmoprotectant transporter ProP
NEW: ProQ activator of osmoprotectant transporter ProP

In 8 genomes
OLD: Activator of osmoprotectant transporter ProP
NEW: ProQ activator of osmoprotectant transporter ProP

In 6 genomes
OLD: Activator of osmoprotectant transporter ProP based on FIGfams
NEW: ProQ activator of osmoprotectant transporter ProP

In 2 genomes
OLD: Activator of osmoprotectant transporter ProP based on unreliable automated assignments
NEW: ProQ activator of osmoprotectant transporter ProP

In 3 genomes
OLD: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
NEW: Aspartate aminotransferase (EC 2.6.1.1)

In 1 genome
OLD: COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
NEW: Uncharacterized protein YP2222

In 1 genome
OLD: COG0083: Homoserine kinase
NEW: Uncharacterized protein YP2222

In 1 genome
OLD: COG0180: Tryptophanyl-tRNA synthetase
NEW: RNA-binding protein CsrA

In 1 genome
OLD: COG0344: Predicted membrane protein
NEW: RNA-binding protein CsrA

In 1 genome
OLD: COG0457: FOG: TPR repeat
NEW: RNA-binding protein CsrA

In 1 genome
OLD: COG0476: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
NEW: RNA-binding protein CsrA

In 1 genome
OLD: COG0578: Glycerol-3-phosphate dehydrogenase
NEW: RNA-binding protein CsrA

In 1 genome
OLD: COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreductases
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: COG0766: UDP-N-acetylglucosamine enolpyruvyl transferase
NEW: RNA-binding protein CsrA

In 1 genome
OLD: COG0840: Methyl-accepting chemotaxis protein
NEW: RNA-binding protein CsrA

In 1 genome
OLD: COG1609: Transcriptional regulators
NEW: RNA-binding protein CsrA

In 7 genomes
OLD: COG1629: Outer membrane receptor proteins, mostly Fe transport based on unreliable automated assignments
NEW: Outer membrane receptor proteins, mostly Fe transport

In 1 genome
OLD: COG1738: Uncharacterized conserved protein
NEW: RNA-binding protein CsrA

In 1 genome
OLD: COG1741: Pirin-related protein
NEW: Uncharacterized protein YP2222

In 1 genome
OLD: COG1960: Acyl-CoA dehydrogenases
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: COG2704: Anaerobic C4-dicarboxylate transporter
NEW: Uncharacterized protein YP2222

In 1 genome
OLD: COG2844: UTP:GlnB (protein PII) uridylyltransferase
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: COG4177: ABC-type branched-chain amino acid transport system, permease component
NEW: Uncharacterized protein YP2222

In 1 genome
OLD: Carbon storage regulator
NEW: RNA-binding protein CsrA / Domain of unknown function

In 145 genomes
OLD: Carbon storage regulator
NEW: RNA-binding protein CsrA

In 445 genomes
OLD: Carbon storage regulator
NEW: RNA-binding protein CsrA

In 1 genome
OLD: Carbon storage regulator # truncated N-terminus by in-frame stop codon
NEW: RNA-binding protein CsrA # truncated N-terminus by in-frame stop codon

In 9 genomes
OLD: Carbon storage regulator / Domain of unknown function
NEW: RNA-binding protein CsrA / Domain of unknown function

In 1 genome
OLD: Carbon storage regulator / Flagellar assembly factor FliW
NEW: RNA-binding protein CsrA / Flagellar assembly factor FliW

In 1 genome
OLD: Carbon storage regulator / Flagellar assembly factor FliW
NEW: RNA-binding protein CsrA / Flagellar assembly factor FliW

In 616 genomes
OLD: Carbon storage regulator based on FIGfams
NEW: RNA-binding protein CsrA

In 44 genomes
OLD: Carbon storage regulator based on unreliable automated assignments
NEW: RNA-binding protein CsrA

In 1 genome
OLD: Carbon storage regulator-related protein
NEW: RNA-binding protein CsrA

In 2 genomes
OLD: DUF1653 domain-containing protein Pfl_3877 / Domain of unknown function
NEW: DUF1653 domain-containing protein Pfl_3877 / Domain of unknown function Cphy_3046

In 7 genomes
OLD: DUF1653 domain-containing protein Pfl_3877 / Domain of unknown function
NEW: DUF1653 domain-containing protein Pfl_3877 / Domain of unknown function Cphy_3046.C

In 2 genomes
OLD: DUF1653 domain-containing protein Pfl_3877 / Domain of unknown function Cphy_3046
NEW: DUF1653 domain-containing protein Pfl_3877 / Domain of unknown function Cphy_3046.C

In 1 genome
OLD: Domain of unknown function DUF4112
NEW: hypothetical protein

In 1 genome
OLD: FIG00351101: hypothetical protein based on FIGfams
NEW: DUF1653 domain-containing protein Pfl_3877

In 3 genomes
OLD: FIG00452526: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 11 genomes
OLD: FIG00452526: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: FIG00506563: hypothetical protein
NEW: RNA chaperone ProQ

In 1 genome
OLD: FIG00507983: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: FIG00508499: hypothetical protein
NEW: RNA chaperone ProQ

In 2 genomes
OLD: FIG00510586: hypothetical protein
NEW: Uncharacterized protein YP2222

In 3 genomes
OLD: FIG00521076: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 3 genomes
OLD: FIG00522853: hypothetical protein
NEW: Uncharacterized MFS-type transporter

In 1 genome
OLD: FIG00537005: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 1 genome
OLD: FIG00537380: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: FIG00538710: hypothetical protein
NEW: hypothetical protein

In 10 genomes
OLD: FIG00543928: hypothetical protein
NEW: ATP-binding protein SCO5169

In 7 genomes
OLD: FIG00543928: hypothetical protein
NEW: ATP-binding protein SCO5169

In 2 genomes
OLD: FIG00589879: hypothetical protein
NEW: Protein-L-isoD(D-D) O-methyltransferase

In 2 genomes
OLD: FIG00613542: hypothetical protein
NEW: Uncharacterized protein ECA2717

In 3 genomes
OLD: FIG00622698: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 2 genomes
OLD: FIG00623461: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 2 genomes
OLD: FIG00623461: hypothetical protein based on FIGfams
NEW: Uncharacterized protein KPN_01656

In 1 genome
OLD: FIG00626895: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 1 genome
OLD: FIG00634709: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 1 genome
OLD: FIG00634709: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 2 genomes
OLD: FIG00653315: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 3 genomes
OLD: FIG00672152: hypothetical protein
NEW: ATP-binding protein SCO5169

In 2 genomes
OLD: FIG00675705: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: FIG00680147: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 2 genomes
OLD: FIG00688757: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: FIG00732260: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 2 genomes
OLD: FIG00732518: hypothetical protein
NEW: Uncharacterized protein YP2222

In 4 genomes
OLD: FIG00732518: hypothetical protein
NEW: Uncharacterized protein YP2222

In 1 genome
OLD: FIG00780377: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 2 genomes
OLD: FIG00784995: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: FIG00786808: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 2 genomes
OLD: FIG00847408: hypothetical protein
NEW: RNA chaperone ProQ

In 2 genomes
OLD: FIG00849893: hypothetical protein
NEW: RNA chaperone ProQ

In 1 genome
OLD: FIG00874860: hypothetical protein
NEW: Antitoxin HicB

In 1 genome
OLD: FIG00895304: hypothetical protein
NEW: Protein-L-isoD(D-D) O-methyltransferase

In 1 genome
OLD: FIG00904882: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 1 genome
OLD: FIG00905087: hypothetical protein
NEW: Uncharacterized protein ECA2717

In 2 genomes
OLD: FIG00905295: hypothetical protein
NEW: Uncharacterized protein YP2222

In 1 genome
OLD: FIG00918636: hypothetical protein
NEW: hypothetical protein

In 3 genomes
OLD: FIG00920170: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 2 genomes
OLD: FIG00930101: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 2 genomes
OLD: FIG00932121: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: FIG00932317: hypothetical protein
NEW: RNA chaperone ProQ

In 1 genome
OLD: FIG00932317: hypothetical protein based on FIGfams
NEW: RNA chaperone ProQ

In 1 genome
OLD: FIG00951091: hypothetical protein based on FIGfams
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: FIG00951095: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: FIG00951556: hypothetical protein based on FIGfams
NEW: Uncharacterized protein KPN_01656

In 40 genomes
OLD: FIG00953423: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 7 genomes
OLD: FIG00953423: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 3 genomes
OLD: FIG00953423: hypothetical protein based on FIGfams
NEW: DUF1653 domain-containing protein Pfl_3877

In 4 genomes
OLD: FIG00955104: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 12 genomes
OLD: FIG00958584: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 4 genomes
OLD: FIG00968730: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 2 genomes
OLD: FIG00970402: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: FIG00973952: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: FIG00974200: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: FIG00974886: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 3 genomes
OLD: FIG00975157: hypothetical protein
NEW: RNA-binding protein Hfq

In 2 genomes
OLD: FIG01020244: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877 / Domain of unknown function

In 3 genomes
OLD: FIG01029368: hypothetical protein
NEW: ATP-binding protein SCO5169

In 4 genomes
OLD: FIG01031319: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: FIG01031706: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: FIG01055480: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 6 genomes
OLD: FIG01057364: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 4 genomes
OLD: FIG01058459: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 2 genomes
OLD: FIG01061110: hypothetical protein
NEW: Phd/MazE/PemI-like protein

In 1 genome
OLD: FIG01065020: hypothetical protein
NEW: Uncharacterized lipoprotein YgdR

In 1 genome
OLD: FIG01076915: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: FIG01081003: hypothetical protein
NEW: von Willebrand factor, type A

In 1 genome
OLD: FIG01092043: hypothetical protein based on FIGfams
NEW: Gluconate 2-dehydrogenase subunit 3 family protein

In 2 genomes
OLD: FIG01112113: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 2 genomes
OLD: FIG01142580: hypothetical protein
NEW: hypothetical protein

In 2 genomes
OLD: FIG01142653: hypothetical protein
NEW: hypothetical protein

In 2 genomes
OLD: FIG01192360: hypothetical protein
NEW: ATP-binding protein SCO5169

In 1 genome
OLD: FIG01196979: hypothetical protein
NEW: Uncharacterized MFS-type transporter

In 5 genomes
OLD: FIG01197234: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: FIG01199976: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: FIG01199976: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: FIG01200053: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 27 genomes
OLD: FIG01200053: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 3 genomes
OLD: FIG01200053: hypothetical protein based on FIGfams
NEW: Uncharacterized protein KPN_01656

In 2 genomes
OLD: FIG01210487: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 39 genomes
OLD: FIG01220190: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 1 genome
OLD: FIG01227739: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: FIG01229179: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: FIG092679: Fe-S oxidoreductase
NEW: tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase (EC 2.8.4.3)

In 1 genome
OLD: Fosmidomycin resistance protein
NEW: Uncharacterized MFS-type transporter

In 3 genomes
OLD: Fosmidomycin resistance protein
NEW: Uncharacterized MFS-type transporter

In 1 genome
OLD: Fosmidomycin resistance protein based on unreliable automated assignments
NEW: Uncharacterized MFS-type transporter

In 1 genome
OLD: Glutamine synthetase type II, eukaryotic (EC 6.3.1.2) based on FIGfams
NEW: Glutamine synthetase type I (EC 6.3.1.2)

In 1 genome
OLD: Glutamine synthetase, clostridia type (EC 6.3.1.2) based on FIGfams
NEW: Glutamine synthetase type I (EC 6.3.1.2)

In 1 genome
OLD: KEGG: aba:Acid345_1188 hypothetical protein from original annotations
NEW: RNA-binding protein Hfq

In 1 genome
OLD: Legionella vir region protein
NEW: RNA-binding protein CsrA

In 2 genomes
OLD: Legionella vir region protein based on FIGfams
NEW: RNA-binding protein CsrA

In 6 genomes
OLD: LvrC
NEW: RNA-binding protein CsrA

In 1 genome
OLD: M. jannaschii predicted coding region MJ1435
NEW: RNA-binding protein Hfq, archaeal

In 2 genomes
OLD: Neopullulanase (EC 3.2.1.135) based on FIGfams
NEW: Neopullulanase (EC 3.2.1.135) / DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: Neopullulanase (EC 3.2.1.135) based on unreliable automated assignments
NEW: Neopullulanase (EC 3.2.1.135) / DUF1653 domain-containing protein Pfl_3877

In 7 genomes
OLD: None
NEW: L-Proline/Glycine betaine transporter ProP

In 4 genomes
OLD: None
NEW: Protein-L-isoD(D-D) O-methyltransferase

In 5 genomes
OLD: None
NEW: Outer membrane receptor proteins, mostly Fe transport

In 1 genome
OLD: None
NEW: RNA-binding protein CsrA / Flagellar assembly factor FliW

In 15 genomes
OLD: None
NEW: ProQ activator of osmoprotectant transporter ProP

In 1 genome
OLD: None
NEW: Uncharacterized transporter KPN_00538, MFS-type

In 2 genomes
OLD: None
NEW: RNA chaperone Hfq homologue

In 8 genomes
OLD: None
NEW: RNA-binding protein Hfq

In 45 genomes
OLD: None
NEW: RNA chaperone ProQ

In 200 genomes
OLD: None
NEW: DUF1653 domain-containing protein Pfl_3877

In 300 genomes
OLD: None
NEW: Uncharacterized protein KPN_01656

In 2357 genomes
OLD: None
NEW: RNA-binding protein CsrA

In 10 genomes
OLD: None
NEW: ATP-binding protein SCO5169

In 3 genomes
OLD: None
NEW: hypothetical protein

In 4 genomes
OLD: None
NEW: putative benzoate MFS transporter

In 7 genomes
OLD: None
NEW: Uncharacterized protein ECA2717

In 169 genomes
OLD: None
NEW: Uncharacterized protein YP2222

In 6 genomes
OLD: None
NEW: Phage integrase

In 2 genomes
OLD: None
NEW: Phd/MazE/PemI-like protein

In 1 genome
OLD: ProP protein
NEW: putative benzoate MFS transporter

In 1 genome
OLD: ProP protein
NEW: Uncharacterized MFS-type transporter

In 2 genomes
OLD: ProP protein based on unreliable automated assignments
NEW: Uncharacterized MFS-type transporter

In 2 genomes
OLD: ProP protein based on unreliable automated assignments
NEW: Uncharacterized transporter KPN_00538, MFS-type

In 36 genomes
OLD: ProQ activator of osmoprotectant transporter ProP
NEW: RNA chaperone ProQ

In 2 genomes
OLD: ProQ activator of osmoprotectant transporter ProP
NEW: RNA chaperone ProQ

In 7 genomes
OLD: ProQ activator of osmoprotectant transporter ProP based on unreliable automated assignments
NEW: RNA chaperone ProQ

In 1 genome
OLD: ProQ-like, activator of ProP osmoprotectant transporter
NEW: RNA chaperone ProQ

In 3 genomes
OLD: ProQ-like, activator of ProP osmoprotectant transporter
NEW: RNA chaperone ProQ

In 3 genomes
OLD: ProQ-like, activator of ProP osmoprotectant transporter based on FIGfams
NEW: RNA chaperone ProQ

In 2 genomes
OLD: ProQ: influences osmotic activation of compatible solute ProP
NEW: RNA chaperone ProQ

In 1 genome
OLD: ProQ: influences osmotic activation of compatible solute ProP based on FIGfams
NEW: RNA chaperone ProQ

In 1 genome
OLD: ProQ: influences osmotic activation of compatible solute ProP based on unreliable automated assignments
NEW: RNA chaperone ProQ

In 1 genome
OLD: Proline/betaine transporter
NEW: L-Proline/Glycine betaine transporter ProP

In 1 genome
OLD: Proline/betaine transporter
NEW: L-Proline/Glycine betaine transporter ProP

In 1 genome
OLD: Prop transport protein
NEW: L-Proline/Glycine betaine transporter ProP

In 3 genomes
OLD: Prop transport protein based on FIGfams
NEW: L-Proline/Glycine betaine transporter ProP

In 1 genome
OLD: Protein of unknown function DUF1653 based on unreliable automated assignments
NEW: DUF1653 domain-containing protein Pfl_3877 / Domain of unknown function

In 3 genomes
OLD: Protein of unknown function DUF1653 based on unreliable automated assignments
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: Protein-L-isoD(D-D) O-methyltransferase based on FIGfams
NEW: Protein-L-isoD(D-D) O-methyltransferase

In 138 genomes
OLD: Putative ATP-binding protein
NEW: ATP-binding protein SCO5169

In 1 genome
OLD: Putative lipoprotein
NEW: Uncharacterized lipoprotein YgdR

In 10 genomes
OLD: Putative membrane protein
NEW: Membrane protein

In 13 genomes
OLD: RNA chaperone Hfq homologue
NEW: RNA-binding protein Hfq

In 17 genomes
OLD: RNA chaperone Hfq homologue
NEW: RNA-binding protein Hfq

In 44 genomes
OLD: RNA-binding protein Hfq, Bacillus anthracis type 2
NEW: RNA-binding protein Hfq

In 2 genomes
OLD: SAM-dependent methyltransferase
NEW: Protein-L-isoD(D-D) O-methyltransferase

In 2 genomes
OLD: Sensor histidine kinase/response regulator
NEW: RNA-binding protein CsrA / Two-component transcriptional response regulator, LuxR family

In 2 genomes
OLD: Sensor protein
NEW: Two-component system sensor histidine kinase

In 4 genomes
OLD: Site-specific tyrosine recombinase
NEW: Site-specific tyrosine recombinase XerC

In 3 genomes
OLD: TonB-dependent receptor
NEW: Outer membrane receptor proteins, mostly Fe transport

In 1 genome
OLD: TonB-dependent receptor based on unreliable automated assignments
NEW: Outer membrane receptor proteins, mostly Fe transport

In 1 genome
OLD: Two-component system sensor histidine kinase
NEW: RNA-binding protein CsrA / Two-component transcriptional response regulator, LuxR family

In 2 genomes
OLD: Two-component transcriptional response regulator, LuxR family
NEW: RNA-binding protein CsrA / Two-component transcriptional response regulator, LuxR family

In 11 genomes
OLD: UPF0342 protein
NEW: Uncharacterized protein YmcA

In 2 genomes
OLD: Uncharacterized MFS-type transporter
NEW: Multidrug resistance transporter, Bcr/CflA family

In 1 genome
OLD: Uncharacterized protein conserved in bacteria
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: Uncharacterized protein conserved in bacteria based on FIGfams
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: YpiP based on unreliable automated assignments
NEW: Protein-L-isoD(D-D) O-methyltransferase

In 1 genome
OLD: conserved hypothetical protein
NEW: Phd/MazE/PemI-like protein

In 1 genome
OLD: conserved hypothetical protein
NEW: ATP-binding protein SCO5169

In 1 genome
OLD: conserved hypothetical protein based on unreliable automated assignments
NEW: Phd/MazE/PemI-like protein

In 2 genomes
OLD: conserved hypothetical protein based on unreliable automated assignments
NEW: ATP-binding protein SCO5169

In 1 genome
OLD: conserved hypothetical protein from original annotations
NEW: Uncharacterized protein KPN_01656

In 1 genome
OLD: fosmidomycin resistance protein
NEW: Uncharacterized MFS-type transporter

In 1 genome
OLD: fosmidomycin resistance protein based on unreliable automated assignments
NEW: Uncharacterized MFS-type transporter

In 1 genome
OLD: hypothetical protein
NEW: RNA-binding protein CsrA / Two-component transcriptional response regulator, LuxR family

In 13 genomes
OLD: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 4 genomes
OLD: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 1 genome
OLD: hypothetical protein
NEW: SsuF-like protein

In 7 genomes
OLD: hypothetical protein
NEW: ATP-binding protein SCO5169

In 1 genome
OLD: hypothetical protein
NEW: ProQ activator of osmoprotectant transporter ProP

In 1 genome
OLD: hypothetical protein
NEW: RNA chaperone Hfq homologue

In 1 genome
OLD: hypothetical protein
NEW: Uncharacterized sulfur carrier protein

In 1 genome
OLD: hypothetical protein
NEW: RNA chaperone ProQ

In 21 genomes
OLD: hypothetical protein
NEW: DUF1653 domain-containing protein Pfl_3877

In 9 genomes
OLD: hypothetical protein
NEW: Uncharacterized protein KPN_01656

In 1 genome
OLD: hypothetical protein
NEW: RNA-binding protein CsrA

In 1 genome
OLD: hypothetical protein
NEW: ProQ activator of osmoprotectant transporter ProP

In 5 genomes
OLD: hypothetical protein
NEW: Uncharacterized protein YP2222

In 1 genome
OLD: hypothetical protein
NEW: Uncharacterized transporter KPN_00538, MFS-type

In 1 genome
OLD: hypothetical protein
NEW: RNA chaperone Hfq homologue

In 1 genome
OLD: hypothetical protein
NEW: Phd/MazE/PemI-like protein

In 1 genome
OLD: hypothetical protein
NEW: RNA chaperone ProQ

In 1 genome
OLD: hypothetical protein based on FIGfams
NEW: DUF1653 domain-containing protein Pfl_3877 / Domain of unknown function

In 20 genomes
OLD: hypothetical protein based on FIGfams
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: hypothetical protein based on FIGfams
NEW: Antitoxin HicB

In 19 genomes
OLD: hypothetical protein based on FIGfams
NEW: Uncharacterized protein YP2222

In 18 genomes
OLD: hypothetical protein based on FIGfams
NEW: Uncharacterized protein KPN_01656

In 1 genome
OLD: hypothetical protein based on FIGfams
NEW: Phd/MazE/PemI-like protein

In 3 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: DUF1653 domain-containing protein Pfl_3877 / Domain of unknown function

In 3 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Antitoxin HicB

In 6 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Protein-L-isoD(D-D) O-methyltransferase

In 5 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Uncharacterized protein YmcA

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Uncharacterized lipoprotein YgdR

In 9 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: RNA chaperone Hfq homologue

In 4 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: RNA-binding protein Hfq

In 10 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: RNA chaperone ProQ

In 57 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: DUF1653 domain-containing protein Pfl_3877

In 72 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Uncharacterized protein KPN_01656

In 7 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: ATP-binding protein SCO5169

In 4 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: RNA-binding protein CsrA

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: hypothetical protein

In 7 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Uncharacterized protein YP2222

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Uncharacterized sulfur carrier protein

In 3 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Phd/MazE/PemI-like protein

In 1 genome
OLD: hypothetical protein from original annotations
NEW: RNA-binding protein Hfq

In 1 genome
OLD: mttA/Hcf106 family
NEW: Twin-arginine translocation protein TatA

In 1 genome
OLD: predicted ProQ activator of osmoprotectant transporter ProP based on unreliable automated assignments
NEW: ProQ activator of osmoprotectant transporter ProP

In 3 genomes
OLD: proline/betaine transporter
NEW: L-Proline/Glycine betaine transporter ProP

In 5 genomes
OLD: proline/betaine transporter based on unreliable automated assignments
NEW: L-Proline/Glycine betaine transporter ProP

In 1 genome
OLD: protein of unknown function DUF1653
NEW: DUF1653 domain-containing protein Pfl_3877 / Domain of unknown function

In 3 genomes
OLD: protein of unknown function DUF1653
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: protein of unknown function DUF1653 based on unreliable automated assignments
NEW: DUF1653 domain-containing protein Pfl_3877 / Domain of unknown function

In 6 genomes
OLD: protein of unknown function DUF1653 based on unreliable automated assignments
NEW: DUF1653 domain-containing protein Pfl_3877

In 1 genome
OLD: protein-L-IsoD(D-D) O-methyltransferase
NEW: Protein-L-isoD(D-D) O-methyltransferase

In 1 genome
OLD: protein-L-IsoD(D-D) O-methyltransferase based on unreliable automated assignments
NEW: Protein-L-isoD(D-D) O-methyltransferase

In 1 genome
OLD: purine and pyrimidine transporters
NEW: Uncharacterized transporter KPN_00538, MFS-type

In 4 genomes
OLD: putative ATP-binding protein
NEW: ATP-binding protein SCO5169

In 12 genomes
OLD: putative ATP-binding protein
NEW: ATP-binding protein SCO5169

In 4 genomes
OLD: putative ATP-binding protein based on FIGfams
NEW: ATP-binding protein SCO5169

In 5 genomes
OLD: putative ATP-binding protein based on unreliable automated assignments
NEW: ATP-binding protein SCO5169

In 1 genome
OLD: putative membrane transporter
NEW: Uncharacterized MFS-type transporter

In 1 genome
OLD: site-specific recombinase, phage integrase family
NEW: Phage integrase

In 9 genomes
OLD: site-specific recombinase, phage integrase family based on unreliable automated assignments
NEW: Phage integrase

In 1 genome
OLD: tRNA epoxyqueuosine(34) reductase (EC 1.17.99.6)
NEW: Epoxyqueuosine reductase (EC 1.17.99.6) QueG

In 1 genome
OLD: twin-arginine translocation protein, TatA/E family from original annotations
NEW: Twin-arginine translocation protein TatA

In 2 genomes
OLD: von Willebrand factor type A domain protein
NEW: von Willebrand factor, type A

RAST NEWS

(RAST Citations)


As of Sat Jun 6 15:10:12 2020, there are 4 jobs in the RAST queue

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PUBSEED GENOMES WEEKLY ANNOTATION ACTIVITY

Genome Name (# Annotations)

Microbulbifer variabilis ATCC 700307 (14)
Planctomyces brasiliensis DSM 5305 (9)
Blastopirellula marina DSM 3645 (8)
Legionella pneumophila str. Paris (8)
Planctomyces brasiliensis DSM 5305 (8)
Planctomyces limnophilus DSM 3776 (8)
Legionella pneumophila str. Paris (8)
Blastopirellula marina DSM 3645 (8)
Archaeoglobus fulgidus DSM 4304 (7)
Planctomyces limnophilus DSM 3776 (7)
Planctomyces limnophilus DSM 3776 (7)
Pseudomonas putida KT2440 (7)
Pirellula staleyi DSM 6068 (7)
Pseudomonas aeruginosa PAK (6)
Legionella pneumophila str. Lens (6)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (6)
Pseudomonas aeruginosa NCMG1179 (6)
Pseudomonas aeruginosa PA45 (6)
Pseudomonas aeruginosa PA21_ST175 (6)
Pseudomonas aeruginosa M18 (6)
Pseudomonas aeruginosa MSH-10 (6)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (6)
Pseudomonas aeruginosa AH16 (6)
Legionella pneumophila subsp. pneumophila str. Thunder Bay (6)
Pseudomonas aeruginosa MPAO1/P2 (6)
Legionella pneumophila str. Lens (6)
Pseudomonas aeruginosa PAO1 (6)
Rhodopirellula baltica SH 1 (6)
Pseudomonas fluorescens PfO-1 (5)
Pseudomonas aeruginosa SJTD-1 (5)
Pseudomonas aeruginosa 18A (5)
Cupriavidus taiwanensis (5)
Bacillus cereus biovar anthracis str. CI (5)
Legionella pneumophila subsp. pneumophila str. Hextuple_3a (5)
Pseudomonas aeruginosa MPAO1/P2 (5)
Roseburia intestinalis XB6B4 (5)
Desulfatibacillum alkenivorans AK-01 (5)
Pseudomonas aeruginosa MPAO1/P1 (5)
Pseudomonas aeruginosa 138244 (5)
Legionella pneumophila subsp. pneumophila LPE509 (5)
Pseudomonas aeruginosa LCT-PA102 (5)
Pseudomonas fulva 12-X (5)
Pseudomonas aeruginosa PAO1 (5)
Pseudomonas aeruginosa PAO579 (5)
Legionella pneumophila subsp. pneumophila ATCC 43290 (5)
Pseudomonas aeruginosa E2 (5)
Pseudomonas fluorescens Pf0-1 (5)
Pseudomonas aeruginosa VRFPA02 (5)
Pirellula sp. 1 (5)
Pseudomonas syringae pv. phaseolicola 1448A (5)
Desulfatibacillum alkenivorans AK-01 (5)
Pseudomonas aeruginosa PACS2 (5)