The Daily SEED


PUBSEED ANNOTATIONS

In 1 genome
OLD: (S)-methylmalonyl-CoA decarboxylase (sodium-transporting), alpha subunit (EC 7.2.4.3)
NEW: Glutaconyl-CoA decarboxylase alpha subunit (EC 7.2.4.5)

In 1 genome
OLD: (S)-methylmalonyl-CoA decarboxylase (sodium-transporting), delta subunit (EC 7.2.4.3)
NEW: Glutaconyl-CoA decarboxylase delta subunit (EC 7.2.4.5)

In 1 genome
OLD: (S)-methylmalonyl-CoA decarboxylase (sodium-transporting), gamma subunit (EC 7.2.4.3)
NEW: Biotin carboxyl carrier protein => Glutaconyl-CoA decarboxylase gamma subunit

In 1 genome
OLD: 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [pyochelin] siderophore
NEW: Salicylate--[aryl-carrier protein] ligase (EC 6.2.1.61) @ 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) of siderophore biosynthesis

In 3 genomes
OLD: 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [pyochelin] siderophore
NEW: Salicylate--[aryl-carrier protein] ligase (EC 6.2.1.61) @ 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) of siderophore biosynthesis

In 1 genome
OLD: 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [pyochelin] siderophore based on FIGfams
NEW: Salicylate--[aryl-carrier protein] ligase (EC 6.2.1.61) @ 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) of siderophore biosynthesis

In 1 genome
OLD: 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) based on unreliable automated assignments
NEW: Salicylate--CoA ligase (EC 6.2.1.65)

In 1 genome
OLD: 3-methylmercaptopropionyl-CoA ligase (DmdB)
NEW: Carboxylate--CoA ligase

In 1 genome
OLD: Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative based on FIGfams
NEW: 4-hydroxybutyrate--CoA ligase (ADP-forming) (EC 6.2.1.56)

In 1 genome
OLD: Acetyl-CoA synthetase (EC 6.2.1.1)
NEW: 4-hydroxybutyrate--CoA ligase (AMP-forming) (EC 6.2.1.40)

In 3 genomes
OLD: Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) / Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2); Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
NEW: Glutaconyl-CoA decarboxylase alpha subunit (EC 7.2.4.5)

In 1 genome
OLD: Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) / Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2); Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
NEW: (S)-methylmalonyl-CoA decarboxylase (sodium-transporting), alpha subunit (EC 7.2.4.3)

In 2 genomes
OLD: Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) / Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2); Propionyl-CoA carboxylase beta chain (EC 6.4.1.3); (S)-methylmalonyl-CoA decarboxylase (sodium-transporting), alpha subunit (EC 7.2.4.3)
NEW: (S)-methylmalonyl-CoA decarboxylase (sodium-transporting), alpha subunit (EC 7.2.4.3)

In 5 genomes
OLD: Acyl-CoA dehydrogenase
NEW: Glutaryl-CoA dehydrogenase (acceptor) (EC 1.3.99.32)

In 2 genomes
OLD: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1)
NEW: Glutaryl-CoA dehydrogenase (acceptor) (EC 1.3.99.32)

In 1 genome
OLD: Biotin carboxyl carrier protein => Glutaconyl-CoA decarboxylase gamma subunit
NEW: (S)-methylmalonyl-CoA decarboxylase (sodium-transporting), gamma subunit (EC 7.2.4.3)

In 1 genome
OLD: Carboxylate--CoA ligase
NEW: 4-hydroxybutyrate--CoA ligase (AMP-forming) (EC 6.2.1.40)

In 1 genome
OLD: Carboxylate--CoA ligase
NEW: Salicylate--CoA ligase (EC 6.2.1.65)

In 287 genomes
OLD: Cobyric acid synthase (EC 6.3.5.10)
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 2 genomes
OLD: Cyclic 2,3-diphosphoglycerate synthase
NEW: Cyclic 2,3-diphosphoglycerate synthase (EC 6.5.1.9)

In 2 genomes
OLD: Cyclic 2,3-diphosphoglycerate-synthetase
NEW: Cyclic 2,3-diphosphoglycerate synthase (EC 6.5.1.9)

In 1 genome
OLD: Cyclic 2,3-diphosphoglycerate-synthetase based on FIGfams
NEW: Cyclic 2,3-diphosphoglycerate synthase (EC 6.5.1.9)

In 1 genome
OLD: Cyclic 2,3-diphosphoglycerate-synthetase based on unreliable automated assignments
NEW: Cyclic 2,3-diphosphoglycerate synthase (EC 6.5.1.9)

In 2057 genomes
OLD: D-alanine--poly(phosphoribitol) ligase ACP subunit (EC 6.1.1.13)
NEW: D-alanyl-carrier protein DltC

In 1 genome
OLD: D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)
NEW: D-alanine--D-alanyl carrier protein ligase (EC 6.2.1.54)

In 49 genomes
OLD: D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)
NEW: D-alanine--D-alanyl carrier protein ligase (EC 6.2.1.54)

In 2 genomes
OLD: D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13) # frameshift
NEW: D-alanine--D-alanyl carrier protein ligase (EC 6.2.1.54) # frameshift

In 191 genomes
OLD: D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13) based on FIGfams
NEW: D-alanine--D-alanyl carrier protein ligase (EC 6.2.1.54)

In 3 genomes
OLD: D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13) based on unreliable automated assignments
NEW: D-alanine--D-alanyl carrier protein ligase (EC 6.2.1.54)

In 7 genomes
OLD: D-alanyl transfer protein DltB
NEW: Teichoic acid D-alanyltransferase DltB

In 55 genomes
OLD: D-alanyl transfer protein DltB
NEW: Teichoic acid D-alanyltransferase DltB

In 1 genome
OLD: D-alanyl transfer protein DltB # fragment
NEW: Teichoic acid D-alanyltransferase DltB # fragment

In 221 genomes
OLD: D-alanyl transfer protein DltB based on FIGfams
NEW: Teichoic acid D-alanyltransferase DltB

In 1 genome
OLD: DUF1015 protein BVU_3243
NEW: Related to HTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning

In 4 genomes
OLD: FIG00815532: hypothetical protein
NEW: UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase (EC 5.1.1.23)

In 3 genomes
OLD: FIG00973417: hypothetical protein
NEW: Cyclic 2,3-diphosphoglycerate synthase (EC 6.5.1.9)

In 2 genomes
OLD: FIG01111718: hypothetical protein
NEW: UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase (EC 5.1.1.23)

In 8 genomes
OLD: FIG01210076: hypothetical protein
NEW: UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase (EC 5.1.1.23)

In 5 genomes
OLD: FIG01217809: hypothetical protein
NEW: UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase (EC 5.1.1.23)

In 1 genome
OLD: Glutaconyl-CoA decarboxylase alpha subunit (EC 7.2.4.5)
NEW: (S)-methylmalonyl-CoA decarboxylase (sodium-transporting), alpha subunit (EC 7.2.4.3)

In 1 genome
OLD: Glutaconyl-CoA decarboxylase delta subunit (EC 7.2.4.5)
NEW: (S)-methylmalonyl-CoA decarboxylase (sodium-transporting), delta subunit (EC 7.2.4.3)

In 2 genomes
OLD: Heme ABC type transporter HtsABC, heme-binding protein
NEW: Ferric-staphyloferrin A ABC transporter, substrate-binding protein

In 18 genomes
OLD: Heme ABC type transporter HtsABC, heme-binding protein based on FIGfams
NEW: Ferric-staphyloferrin A ABC transporter, substrate-binding protein

In 12 genomes
OLD: Heme ABC type transporter HtsABC, permease protein HtsB
NEW: Ferric-staphyloferrin A ABC transporter, permease protein 1

In 42 genomes
OLD: Heme ABC type transporter HtsABC, permease protein HtsB based on FIGfams
NEW: Ferric-staphyloferrin A ABC transporter, permease protein 1

In 14 genomes
OLD: Heme ABC type transporter HtsABC, permease protein HtsC
NEW: Ferric-staphyloferrin A ABC transporter, permease protein 2

In 42 genomes
OLD: Heme ABC type transporter HtsABC, permease protein HtsC based on FIGfams
NEW: Ferric-staphyloferrin A ABC transporter, permease protein 2

In 1 genome
OLD: Heme ABC type transporter HtsABC, permease protein HtsC based on unreliable automated assignments
NEW: Ferric-staphyloferrin A ABC transporter, permease protein 2

In 343 genomes
OLD: Lipid II isoglutaminyl synthase (GatD)
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 363 genomes
OLD: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), GatD subunit (EC 6.3.5.13)
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 1 genome
OLD: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), GatD subunit (EC 6.3.5.13)
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), GatD subunit (EC 6.3.5.13)

In 8 genomes
OLD: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 1692 genomes
OLD: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), GatD subunit (EC 6.3.5.13)

In 2 genomes
OLD: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
NEW: Carboxylate--CoA ligase

In 1 genome
OLD: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
NEW: Carboxylate--CoA ligase

In 1 genome
OLD: None
NEW: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)

In 220 genomes
OLD: None
NEW: L-2,3-diaminopropanoate--citrate ligase (EC 6.3.2.54) @ Siderophore synthetase superfamily, group A

In 302 genomes
OLD: None
NEW: Staphyloferrin A synthase (EC 6.3.2.57) @ Siderophore synthetase superfamily, group B

In 247 genomes
OLD: None
NEW: 2-[(L-alanin-3-ylcarbamoyl)methyl]-2-hydroxybutanedioate decarboxylase (EC 4.1.1.117)

In 245 genomes
OLD: None
NEW: Staphyloferrin B synthase (EC 6.3.2.56) @ Siderophore synthetase superfamily, group B

In 321 genomes
OLD: None
NEW: N-(2-amino-2-carboxyethyl)-L-glutamate synthase (EC 2.5.1.140)

In 1 genome
OLD: None
NEW: GTPase

In 20 genomes
OLD: None
NEW: Ferric-staphyloferrin A ABC transporter, substrate-binding protein

In 339 genomes
OLD: None
NEW: L-serine kinase (ATP) (EC 2.7.1.225)

In 680 genomes
OLD: None
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 642 genomes
OLD: None
NEW: D-alanine--D-alanyl carrier protein ligase (EC 6.2.1.54)

In 1 genome
OLD: None
NEW: O-ureido-serine racemase (EC 5.1.1.19)

In 20 genomes
OLD: None
NEW: UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase (EC 5.1.1.23)

In 6 genomes
OLD: None
NEW: Salicylate--[aryl-carrier protein] ligase (EC 6.2.1.61) @ 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) of siderophore biosynthesis

In 741 genomes
OLD: None
NEW: Teichoic acid D-alanyltransferase DltB

In 232 genomes
OLD: None
NEW: Ferric-staphyloferrin A ABC transporter, permease protein 2

In 219 genomes
OLD: None
NEW: Ferric-staphyloferrin A ABC transporter, permease protein 1

In 373 genomes
OLD: None
NEW: RNA-2',3'-PO4:RNA-5'-OH ligase (EC 6.5.1.8)

In 2 genomes
OLD: None
NEW: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) / Biotin carboxyl carrier protein

In 159 genomes
OLD: None
NEW: 2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoate synthase (EC 6.3.2.55) @ Siderophore synthetase superfamily, group C

In 72 genomes
OLD: None
NEW: D-ornithine---citrate ligase (EC 6.3.2.58) @ Siderophore synthetase superfamily, group B

In 4 genomes
OLD: Oxaloacetate decarboxylase Na(+) pump, alpha chain (EC 7.2.4.2)
NEW: Oxaloacetate decarboxylase Na(+) pump, alpha chain (EC 7.2.4.2) / Biotin carboxyl carrier protein

In 1 genome
OLD: Phosphoglycerate dehydrogenase-like protein
NEW: D-lactate dehydrogenase (EC 1.1.1.28)

In 2 genomes
OLD: Polyketide synthase modules and related proteins
NEW: L-proline--[L-prolyl-carrier protein] ligase (EC 6.2.1.53)

In 173 genomes
OLD: Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD23
NEW: Polyketide synthase modules and related proteins @ Long-chain fatty acid adenylase/transferase FadD23 (EC 6.2.1.57)

In 4 genomes
OLD: Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD26
NEW: Polyketide synthase modules and related proteins @ Long-chain fatty acid adenylase/transferase FadD26 (EC 6.2.1.59)

In 1 genome
OLD: Predicted arginine uptake transporter
NEW: Uncharacterized protein SAV2177

In 899 genomes
OLD: Proposed amino acid ligase found clustered with an amidotransferase
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 4 genomes
OLD: Proposed amino acid ligase found clustered with an amidotransferase # truncated
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13) # truncated

In 5 genomes
OLD: Proposed amino acid ligase found clustered with an amidotransferase / Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)
NEW: Proposed amino acid ligase found clustered with an amidotransferase / Lipid II isoglutaminyl synthase (glutamine-hydrolysing), GatD subunit (EC 6.3.5.13)

In 5 genomes
OLD: Proposed amino acid ligase found clustered with an amidotransferase / Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13) / Lipid II isoglutaminyl synthase (glutamine-hydrolysing), GatD subunit (EC 6.3.5.13)

In 5 genomes
OLD: Proposed amino acid ligase found clustered with an amidotransferase / Putative amidotransferase similar to cobyric acid synthase
NEW: Proposed amino acid ligase found clustered with an amidotransferase / Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 1 genome
OLD: Protein RtcB
NEW: RNA-2',3'-PO4:RNA-5'-OH ligase (EC 6.5.1.8)

In 1 genome
OLD: Protein RtcB
NEW: RNA-2',3'-PO4:RNA-5'-OH ligase (EC 6.5.1.8) @ intein-containing

In 1 genome
OLD: Protein RtcB
NEW: RNA-2',3'-PO4:RNA-5'-OH ligase (EC 6.5.1.8) @ intein-containing

In 1 genome
OLD: Protein RtcB @ intein-containing
NEW: RNA-2',3'-PO4:RNA-5'-OH ligase (EC 6.5.1.8) @ intein-containing

In 2 genomes
OLD: Protein RtcB @ intein-containing
NEW: RNA-2',3'-PO4:RNA-5'-OH ligase (EC 6.5.1.8) @ intein-containing

In 1 genome
OLD: Protein that acts together with Ula1p to activate Rub1p before its conjugation to proteins (neddlyation), which may play a role in protein degradation; GFP-fusion protein localizes to the cytoplasm in a punctate pattern
NEW: E1 NEDD8-activating enzyme (EC 6.2.1.64)

In 1 genome
OLD: Protein that acts together with Ula1p to activate Rub1p before its conjugation to proteins (neddlyation), which may play a role in protein degradation; GFP-fusion protein localizes to the cytoplasm in a punctate pattern Based on inheritance from PEG fig|4932.3.peg.6527
NEW: E1 NEDD8-activating enzyme (EC 6.2.1.64)

In 21 genomes
OLD: Putative amidotransferase similar to cobyric acid synthase
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 254 genomes
OLD: Putative amidotransferase similar to cobyric acid synthase
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 54 genomes
OLD: Putative amidotransferase similar to cobyric acid synthase based on FIGfams
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 53 genomes
OLD: Putative amidotransferase similar to cobyric acid synthase based on unreliable automated assignments
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 15 genomes
OLD: Pyridoxal 5'-phosphate synthase (glutamine hydrolyzing), glutaminase subunit (EC 4.3.3.6)
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), GatD subunit (EC 6.3.5.13)

In 449 genomes
OLD: RNA-2',3'-PO4:RNA-5'-OH ligase
NEW: RNA-2',3'-PO4:RNA-5'-OH ligase (EC 6.5.1.8)

In 191 genomes
OLD: RNA-2',3'-PO4:RNA-5'-OH ligase
NEW: RNA-2',3'-PO4:RNA-5'-OH ligase (EC 6.5.1.8)

In 1 genome
OLD: RNA-2',3'-PO4:RNA-5'-OH ligase # fragment
NEW: RNA-2',3'-PO4:RNA-5'-OH ligase (EC 6.5.1.8) # fragment

In 6 genomes
OLD: RNA-2',3'-PO4:RNA-5'-OH ligase @ intein-containing
NEW: RNA-2',3'-PO4:RNA-5'-OH ligase (EC 6.5.1.8) @ intein-containing

In 2 genomes
OLD: S)-methylmalonyl-CoA decarboxylase (sodium-transporting), delta subunit (EC 7.2.4.3) # fragment
NEW: (S)-methylmalonyl-CoA decarboxylase (sodium-transporting), delta subunit (EC 7.2.4.3) # fragment

In 4 genomes
OLD: SAMP-activating enzyme E1
NEW: E1 SAMP-activating enzyme (EC 6.2.1.55)

In 9 genomes
OLD: Salicylate--[aryl-carrier protein] ligase (EC 6.2.1.61) @ 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) of siderophore biosynthesis
NEW: Salicylate--[aryl-carrier protein] ligase (EC 6.2.1.61)

In 1 genome
OLD: Siderophore staphylobactin biosynthesis protein SbnA
NEW: N-(2-amino-2-carboxyethyl)-L-glutamate synthase (EC 2.5.1.140)

In 21 genomes
OLD: Siderophore staphylobactin biosynthesis protein SbnA
NEW: N-(2-amino-2-carboxyethyl)-L-glutamate synthase (EC 2.5.1.140)

In 64 genomes
OLD: Siderophore staphylobactin biosynthesis protein SbnA based on FIGfams
NEW: N-(2-amino-2-carboxyethyl)-L-glutamate synthase (EC 2.5.1.140)

In 1 genome
OLD: Siderophore staphylobactin biosynthesis protein SbnA based on unreliable automated assignments
NEW: N-(2-amino-2-carboxyethyl)-L-glutamate synthase (EC 2.5.1.140)

In 54 genomes
OLD: Siderophore staphylobactin biosynthesis protein SbnC @ Siderophore synthetase superfamily, group B
NEW: Staphyloferrin B synthase (EC 6.3.2.56) @ Siderophore synthetase superfamily, group B

In 4 genomes
OLD: Siderophore staphylobactin biosynthesis protein SbnC @ Siderophore synthetase superfamily, group B based on FIGfams
NEW: Staphyloferrin B synthase (EC 6.3.2.56) @ Siderophore synthetase superfamily, group B

In 34 genomes
OLD: Siderophore staphylobactin biosynthesis protein SbnE @ Siderophore synthetase superfamily, group A
NEW: L-2,3-diaminopropanoate--citrate ligase (EC 6.3.2.54) @ Siderophore synthetase superfamily, group A

In 25 genomes
OLD: Siderophore staphylobactin biosynthesis protein SbnF @ Siderophore synthetase superfamily, group C
NEW: 2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoate synthase (EC 6.3.2.55) @ Siderophore synthetase superfamily, group C

In 10 genomes
OLD: Siderophore staphylobactin biosynthesis protein SbnH
NEW: 2-[(L-alanin-3-ylcarbamoyl)methyl]-2-hydroxybutanedioate decarboxylase (EC 4.1.1.117)

In 46 genomes
OLD: Siderophore staphylobactin biosynthesis protein SbnH based on FIGfams
NEW: 2-[(L-alanin-3-ylcarbamoyl)methyl]-2-hydroxybutanedioate decarboxylase (EC 4.1.1.117)

In 2 genomes
OLD: Siderophore staphylobactin biosynthesis protein SbnI
NEW: L-serine kinase (ATP) (EC 2.7.1.225)

In 25 genomes
OLD: Siderophore staphylobactin biosynthesis protein SbnI
NEW: L-serine kinase (ATP) (EC 2.7.1.225)

In 70 genomes
OLD: Siderophore staphylobactin biosynthesis protein SbnI based on FIGfams
NEW: L-serine kinase (ATP) (EC 2.7.1.225)

In 1 genome
OLD: Similar to benzoyl-CoA reductase subunit B
NEW: (R)-2-hydroxyisocaproyl-CoA dehydratase, alpha subunit (EC 4.2.1.157) ## HadB

In 1 genome
OLD: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.45)
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 17 genomes
OLD: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase (EC 6.3.2.9)
NEW: UDP-N-acetylmuramoyl-L-alanine--L-glutamate ligase (EC 6.3.2.53)

In 30 genomes
OLD: UDP-N-acetylmuramoyl-Lalanine--D-glutamate ligase (EC 6.3.2.9)
NEW: UDP-N-acetylmuramoyl-L-alanine--L-glutamate ligase (EC 6.3.2.53)

In 249 genomes
OLD: UDP-N-acetylmuramyl tripeptide synthase (MurT); Lipid II isoglutaminyl synthase
NEW: Lipid II isoglutaminyl synthase (glutamine-hydrolysing), MurT subunit (EC 6.3.5.13)

In 119 genomes
OLD: Uncharacterized MFS-type transporter
NEW: Staphyloferrin A MFS-type transporter

In 222 genomes
OLD: Uncharacterized protein SAV2174
NEW: Uncharacterized protein SAV2177

In 270 genomes
OLD: Uncharacterized protein SAV2177
NEW: Uncharacterized protein SAV2174

In 9 genomes
OLD: Uncharacterized siderophore biosynthesis protein near heme transporter HtsABC @ Siderophore synthetase superfamily, group B
NEW: Staphyloferrin A synthase (EC 6.3.2.57) @ Siderophore synthetase superfamily, group B

In 3 genomes
OLD: Uncharacterized siderophore biosynthesis protein near heme transporter HtsABC @ Siderophore synthetase superfamily, group B
NEW: D-ornithine---citrate ligase (EC 6.3.2.58) @ Siderophore synthetase superfamily, group B

In 65 genomes
OLD: Uncharacterized siderophore biosynthesis protein near heme transporter HtsABC @ Siderophore synthetase superfamily, group B
NEW: Staphyloferrin A synthase (EC 6.3.2.57) @ Siderophore synthetase superfamily, group B

In 39 genomes
OLD: Uncharacterized siderophore biosynthesis protein near heme transporter HtsABC @ Siderophore synthetase superfamily, group B
NEW: D-ornithine---citrate ligase (EC 6.3.2.58) @ Siderophore synthetase superfamily, group B

In 1 genome
OLD: Uncharacterized siderophore biosynthesis protein near heme transporter HtsABC @ Siderophore synthetase superfamily, group B based on FIGfams
NEW: Staphyloferrin A synthase (EC 6.3.2.57) @ Siderophore synthetase superfamily, group B

In 395 genomes
OLD: Vitamin B12 ABC transporter, B12-binding component BtuF
NEW: Ferric-staphyloferrin A ABC transporter, substrate-binding protein

In 1 genome
OLD: biotin carboxyl carrier protein of acyl-CoA carb oxylase based on unreliable automated assignments
NEW: Biotin carboxyl carrier protein

In 269 genomes
OLD: hypothetical protein
NEW: Uncharacterized protein SAV2177

In 1 genome
OLD: hypothetical protein
NEW: Membrane-bound metal-dependent hydrolase YdjM, induced during SOS response

In 1 genome
OLD: hypothetical protein
NEW: Biotin carboxyl carrier protein

In 5 genomes
OLD: hypothetical protein
NEW: UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase (EC 5.1.1.23)

In 2 genomes
OLD: hypothetical protein
NEW: UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase (EC 5.1.1.23)

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)

In 3 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: GTPase

In 10 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase (EC 5.1.1.23)

In 1 genome
OLD: syntenic homolog of Saccharomyces cerevisiae YPR066W (UBA3)
NEW: E1 NEDD8-activating enzyme (EC 6.2.1.64)

In 1 genome
OLD: ubiquitin activating enzyme
NEW: E1 NEDD8-activating enzyme (EC 6.2.1.64)

RAST NEWS

(RAST Citations)


As of Fri Jul 23 22:10:15 2021, there are 87 jobs in the RAST queue

RAST Hourly Queue

RAST Daily Queue

RAST Weekly Queue

PUBSEED GENOMES WEEKLY ANNOTATION ACTIVITY

Genome Name (# Annotations)

Staphylococcus aureus subsp. aureus Mu50 (24)
Staphylococcus aureus subsp. aureus N315 (24)
Staphylococcus aureus A8117 (24)
Staphylococcus aureus A5937 (23)
Staphylococcus aureus M0240 (23)
Staphylococcus aureus subsp. aureus N315 (23)
Staphylococcus aureus subsp. aureus VRS4 (23)
Staphylococcus aureus subsp. aureus Mu3 (23)
Staphylococcus aureus subsp. aureus VRS10 (23)
Staphylococcus aureus A9719 (23)
Staphylococcus aureus A8796 (23)
Staphylococcus aureus A6224 (23)
Staphylococcus aureus subsp. aureus CIG1096 (23)
Staphylococcus aureus subsp. aureus CM05 (22)
Staphylococcus aureus M0213 (22)
Staphylococcus aureus M0288 (22)
Staphylococcus aureus M0171 (22)
Staphylococcus aureus M0330 (22)
Staphylococcus aureus M0060 (22)
Staphylococcus aureus M0173 (22)
Staphylococcus aureus M1193 (22)
Staphylococcus aureus M0104 (22)
Staphylococcus aureus NN54 (22)
Staphylococcus aureus A9763 (22)
Staphylococcus aureus subsp. aureus 21318 (22)
Staphylococcus aureus subsp. aureus JH9 (22)
Staphylococcus aureus A8115 (22)
Staphylococcus aureus M0998 (22)
Staphylococcus aureus M0900 (22)
Staphylococcus aureus M1119 (22)
Staphylococcus aureus M1510 (22)
Staphylococcus aureus subsp. aureus IS-122 (22)
Staphylococcus aureus subsp. aureus VRS1 (22)
Staphylococcus aureus M0270 (22)
Staphylococcus aureus M0334 (22)
Staphylococcus aureus M0586 (22)
Staphylococcus aureus M1405 (22)
Staphylococcus aureus M1036 (22)
Staphylococcus aureus M0823 (22)
Staphylococcus aureus M0273 (22)
Staphylococcus aureus M0692 (22)
Staphylococcus aureus B147830 (22)
Staphylococcus aureus subsp. aureus 091751 (22)
Staphylococcus aureus M0580 (22)
Staphylococcus aureus M0719 (22)
Staphylococcus aureus subsp. aureus IS-3 (22)
Staphylococcus aureus M1109 (22)
Staphylococcus aureus M0329 (22)
Staphylococcus aureus M0200 (22)
Staphylococcus aureus M0769 (22)
Staphylococcus aureus A8819 (22)
Staphylococcus aureus M1244 (22)