The Daily SEED


PUBSEED ANNOTATIONS

In 3 genomes
OLD: Anti-sigma B factor antagonist RsbV
NEW: Anti-sigma factor antagonist BldG ## regulates morphogenesis and antibiotic production

In 1 genome
OLD: Anti-sigma-factor antagonist
NEW: Anti-sigma factor antagonist BldG ## regulates morphogenesis and antibiotic production

In 1 genome
OLD: COG0006: Xaa-Pro aminopeptidase
NEW: TonB-dependent receptor

In 1 genome
OLD: COG1609: Transcriptional regulators
NEW: TonB-dependent receptor

In 1 genome
OLD: COG1939: Ribonuclease III family protein based on FIGfams
NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase

In 19 genomes
OLD: Chromosome (plasmid) partitioning protein ParA
NEW: Chromosome (plasmid) partitioning protein ParA @ F plasmid partitioning protein SopA

In 1 genome
OLD: Chromosome (plasmid) partitioning protein ParA based on FIGfams
NEW: Chromosome (plasmid) partitioning protein ParA @ F plasmid partitioning protein SopA # fragment

In 32 genomes
OLD: Chromosome (plasmid) partitioning protein ParA based on FIGfams
NEW: Chromosome (plasmid) partitioning protein ParA @ F plasmid partitioning protein SopA

In 1 genome
OLD: Chromosome (plasmid) partitioning protein ParA based on unreliable automated assignments
NEW: Chromosome (plasmid) partitioning protein ParA @ F plasmid partitioning protein SopA # fragment

In 18 genomes
OLD: Chromosome (plasmid) partitioning protein ParB
NEW: Chromosome (plasmid) partitioning protein ParB @ F plasmid partitioning protein SopB

In 47 genomes
OLD: Chromosome (plasmid) partitioning protein ParB based on FIGfams
NEW: Chromosome (plasmid) partitioning protein ParB @ F plasmid partitioning protein SopB

In 221 genomes
OLD: Colicin I receptor
NEW: TonB-dependent receptor

In 1 genome
OLD: Cysteinyl-tRNA synthetase (EC 6.1.1.16) / Mini-ribonuclease III
NEW: Cysteinyl-tRNA synthetase (EC 6.1.1.16) / LSU rRNA maturation endonuclease Mini-ribonuclease III

In 1 genome
OLD: Cytidine deaminase (EC 3.5.4.5)
NEW: Cytidine deaminase (EC 3.5.4.5) #fraction

In 1 genome
OLD: Cytidine deaminase (EC 3.5.4.5)
NEW: Cytidine deaminase (EC 3.5.4.5) fragment

In 1 genome
OLD: Cytidine deaminase (EC 3.5.4.5) #fraction
NEW: Cytidine deaminase (EC 3.5.4.5) fragment

In 28 genomes
OLD: Cytidine deaminase (EC 3.5.4.5) based on FIGfams
NEW: Cytidine deaminase (EC 3.5.4.5) #E. faecium-like

In 1 genome
OLD: FIG00684662: hypothetical protein
NEW: TonB-dependent receptor

In 1 genome
OLD: Ferrichrome-iron receptor based on unreliable automated assignments
NEW: TonB-dependent receptor

In 1 genome
OLD: FyuA precursor
NEW: TonB-dependent receptor

In 157 genomes
OLD: LSU rRNA maturation endonuclease Mini-ribonuclease III
NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase

In 1758 genomes
OLD: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase
NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III

In 8 genomes
OLD: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase
NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase

In 2 genomes
OLD: Mini-ribonuclease III
NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III

In 1225 genomes
OLD: Mini-ribonuclease III ## 23S rRNA maturase
NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase

In 304 genomes
OLD: None
NEW: Chromosome (plasmid) partitioning protein ParB @ F plasmid partitioning protein SopB

In 1 genome
OLD: None
NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III

In 1 genome
OLD: None
NEW: Protein IcfG

In 102 genomes
OLD: None
NEW: TonB-dependent receptor

In 311 genomes
OLD: None
NEW: Chromosome (plasmid) partitioning protein ParA @ F plasmid partitioning protein SopA

In 9 genomes
OLD: None
NEW: Phosphoserine phosphatase RsbP ## under stress, dephosphorylates RsbV

In 242 genomes
OLD: None
NEW: Cytidine deaminase (EC 3.5.4.5) #E. faecium-like

In 2 genomes
OLD: None
NEW: Phosphoserine phosphatase PA0172

In 531 genomes
OLD: None
NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase

In 1 genome
OLD: Outer membrane heme receptor
NEW: TonB-dependent receptor

In 4 genomes
OLD: Outer membrane protein
NEW: TonB-dependent receptor

In 2 genomes
OLD: Outer membrane protein
NEW: TonB-dependent receptor

In 1 genome
OLD: Outer membrane protein based on unreliable automated assignments
NEW: TonB-dependent receptor

In 8 genomes
OLD: Outer membrane receptor protein
NEW: TonB-dependent receptor

In 1 genome
OLD: Outer membrane receptor proteins, mostly Fe transport
NEW: TonB-dependent receptor

In 2 genomes
OLD: Outer membrane vitamin B12 receptor BtuB
NEW: TonB-dependent receptor

In 4 genomes
OLD: Outer membrane vitamin B12 receptor BtuB
NEW: TonB-dependent receptor

In 1 genome
OLD: Outer membrane vitamin B12 receptor BtuB based on FIGfams
NEW: TonB-dependent receptor

In 5 genomes
OLD: Putative TonB-dependent receptor
NEW: TonB-dependent receptor

In 3 genomes
OLD: Putative outer membrane receptor
NEW: TonB-dependent receptor

In 18 genomes
OLD: Putative outer membrane receptor based on FIGfams
NEW: TonB-dependent receptor

In 4 genomes
OLD: RNA polymerase sporulation-specific sigma factor SigH
NEW: SigH-like RNA polymerase sigma factor

In 1 genome
OLD: Serine phosphatase RsbU from original annotations
NEW: Phosphoserine phosphatase PA0172

In 1 genome
OLD: Serine phosphatase RsbU, regulator of sigma subunit
NEW: Phosphoserine phosphatase PA0172

In 4 genomes
OLD: Serine phosphatase RsbU, regulator of sigma subunit
NEW: Protein IcfG

In 1 genome
OLD: Serine phosphatase RsbU, regulator of sigma subunit
NEW: Phosphoserine phosphatase RsbP ## under stress, dephosphorylates RsbV

In 9 genomes
OLD: Serine phosphatase RsbU, regulator of sigma subunit
NEW: Phosphoserine phosphatase PA0172

In 5 genomes
OLD: Serine phosphatase RsbU, regulator of sigma subunit based on FIGfams
NEW: Phosphoserine phosphatase RsbP ## under stress, dephosphorylates RsbV

In 2 genomes
OLD: Serine phosphatase RsbU, regulator of sigma subunit based on FIGfams
NEW: Phosphoserine phosphatase PA0172

In 1 genome
OLD: Serine phosphatase RsbU, regulator of sigma subunit based on unreliable automated assignments
NEW: Protein IcfG

In 6 genomes
OLD: Serine phosphatase RsbU, regulator of sigma subunit based on unreliable automated assignments
NEW: Phosphoserine phosphatase PA0172

In 1 genome
OLD: Small protein similar to cysteinyl-tRNA synthetase
NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase

In 2 genomes
OLD: TonB family protein based on unreliable automated assignments
NEW: Putative TonB-dependent receptor

In 1 genome
OLD: TonB-Dependent Hemoglobin Receptor HmuR
NEW: TonB-dependent receptor

In 2 genomes
OLD: TonB-ExbBD energy transducing system, ExbB subunit
NEW: MotA/TolQ/ExbB proton channel family protein

In 2 genomes
OLD: TonB-ExbBD energy transducing system, ExbD subunit
NEW: Biopolymer transport protein ExbD/TolR

In 1 genome
OLD: TonB-dependent hemin , ferrichrome receptor
NEW: TonB-dependent receptor

In 1 genome
OLD: TonB-dependent outer membrane receptor
NEW: TonB-dependent receptor

In 3 genomes
OLD: TonB-dependent outer membrane receptor
NEW: TonB-dependent receptor

In 1 genome
OLD: TonB-dependent outer membrane receptor based on FIGfams
NEW: TonB-dependent receptor

In 1 genome
OLD: TonB-dependent outer membrane receptor based on unreliable automated assignments
NEW: TonB-dependent receptor

In 2 genomes
OLD: TonB-dependent receptor, plug based on unreliable automated assignments
NEW: TonB-dependent receptor

In 6 genomes
OLD: TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins
NEW: TonB-dependent receptor

In 1 genome
OLD: TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins based on unreliable automated assignments
NEW: TonB-dependent receptor

In 1 genome
OLD: TonB-dependent siderophore receptor
NEW: TonB-dependent receptor

In 1 genome
OLD: colicin I receptor precursor
NEW: TonB-dependent receptor

In 1 genome
OLD: colicin I receptor precursor based on unreliable automated assignments
NEW: TonB-dependent receptor

In 2 genomes
OLD: ferric siderophore receptor, putative, TonB receptor family
NEW: TonB-dependent receptor

In 1 genome
OLD: hypothetical protein
NEW: Anti-sigma factor antagonist BldG ## regulates morphogenesis and antibiotic production

In 1 genome
OLD: hypothetical protein
NEW: Serine phosphatase RsbU, regulator of sigma subunit

In 11 genomes
OLD: hypothetical protein
NEW: TonB-dependent receptor

In 1 genome
OLD: hypothetical protein
NEW: Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE)

In 1 genome
OLD: hypothetical protein
NEW: MotA/TolQ/ExbB proton channel family protein

In 8 genomes
OLD: hypothetical protein
NEW: TonB-dependent receptor

In 1 genome
OLD: hypothetical protein
NEW: Phosphoserine phosphatase PA0172

In 1 genome
OLD: hypothetical protein based on FIGfams
NEW: Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE)

In 1 genome
OLD: hypothetical protein based on FIGfams
NEW: TPR domain protein

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: TonB-dependent receptor

In 1 genome
OLD: outer membrane B12 receptor based on unreliable automated assignments
NEW: TonB-dependent receptor

In 1 genome
OLD: possible tonB-dependent receptor precursor based on unreliable automated assignments
NEW: TonB-dependent receptor

In 1 genome
OLD: probable TonB-dependent receptor
NEW: TonB-dependent receptor

In 12 genomes
OLD: probable TonB-dependent receptor based on FIGfams
NEW: TonB-dependent receptor

In 1 genome
OLD: putative outer membrane receptor protein based on unreliable automated assignments
NEW: TonB-dependent receptor

In 1 genome
OLD: putative serine phosphatase based on unreliable automated assignments
NEW: Phosphoserine phosphatase PA0172

In 1 genome
OLD: receptor precursor-mostly Fe transport based on unreliable automated assignments
NEW: TonB-dependent receptor

In 2 genomes
OLD: receptor, putative based on unreliable automated assignments
NEW: TonB-dependent receptor

In 1 genome
OLD: serine phosphatase based on unreliable automated assignments
NEW: Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE)

In 1 genome
OLD: tetratricopeptide repeat family protein based on unreliable automated assignments
NEW: TPR domain protein

In 1 genome
OLD: vitamin B12 receptor precursor
NEW: TonB-dependent receptor

In 1 genome
OLD: vitamin B12 receptor precursor based on unreliable automated assignments
NEW: TonB-dependent receptor

RAST NEWS

(RAST Citations)


As of Tue Nov 8 10:10:10 2022, there are 13 jobs in the RAST queue

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PUBSEED GENOMES WEEKLY ANNOTATION ACTIVITY

Genome Name (# Annotations)

Bacillus cereus F (18)
Gloeobacter violaceus PCC 7421 (13)
Bacillus anthracis str. A0442 (9)
Bacillus anthracis str. Western North America USA6153 (9)
Bacillus anthracis str. Australia 94 (9)
Bacillus anthracis str. A0248 (9)
Bacillus anthracis str. CDC 684 (9)
Bacillus anthracis str. BF1 (9)
Bacillus anthracis Tsiankovskii-I (9)
Bacillus anthracis str. Kruger B (9)
Bacillus anthracis str. Heroin Ba4599 (9)
Bacillus anthracis str. 'Ames Ancestor' (9)
Bacillus anthracis str. A0174 (9)
Bacillus anthracis str. Australia 94 (9)
Bacillus anthracis str. 'Ames Ancestor' (9)
Bacillus anthracis str. A0465 (9)
Bacillus anthracis str. Carbosap (9)
Bacillus anthracis str. A0193 (9)
Bacillus cereus ATCC 10987 (9)
Bacillus anthracis str. Vollum (9)
Bacillus anthracis str. H9401 (9)
Bacillus cereus ATCC 10987 (9)
Bacillus anthracis str. A2012 (9)
Bacillus cereus biovar anthracis str. CI (9)
Bacillus anthracis str. 3166 (9)
Bacillus anthracis str. A0488 (9)
Bacillus anthracis str. CNEVA-9066 (9)
Bacillus anthracis str. Vollum (9)
Bacillus anthracis str. A0389 (9)
Bacillus anthracis str. CNEVA-9066 (9)
Bacillus anthracis str. Kruger B (9)
Bacillus cereus VD102 (8)
Bacillus cereus ATCC 4342 (8)
Bacillus cereus VD200 (8)
Bacillus cereus IS075 (8)
Bacillus cereus VD156 (8)
Bacillus cereus W (8)
Bacillus anthracis str. Sen3 (8)
Bacillus cereus VD107 (8)
Bacillus cereus BDRD-ST26 (8)
Bacillus cereus BAG1X2-3 (8)
Bacillus thuringiensis serovar finitimus YBT-020 (8)
Bacillus cereus BAG1O-3 (8)
Bacillus sp. WBUNB004 (8)
Bacillus cereus BAG4X12-1 (8)
Bacillus cereus VD169 (8)
Bacillus cereus AH676 (8)
Bacillus cereus VD014 (8)
Bacillus thuringiensis serovar thuringiensis str. IS5056 (8)
Bacillus thuringiensis Bt407 (8)
Bacillus cereus BAG4O-1 (8)
Bacillus sp. GeD10 (8)